Genotyping of amino acid-producing Corynebacterium glutamicum strains based on multi-locus sequence typing (MLST) scheme
نویسندگان
چکیده
Background: Confusing parental information may hinder to dissect mechanisms of amino acid hyper-producing Corynebacterium glutamicum strains. Thus, an efficient method for genotyping of the C. glutamicum is heavily called. Results: Multi-locus sequence typing (MLST) is currently the most popular molecular typing technique. But currently this method is not available for C. glutamicum. In this study, a MLST scheme was established based on sequences of seven housekeeping genes, for genotyping of C. glutamicum. The MLST method performed an efficient discrimination of 17 strains and helps to understand the population structure of this bacterium. Conclusions: This work has expanded the MLST method to C. glutamicum and developed an efficient technique to discriminate strains of uncertain origin.
منابع مشابه
Characterization of the phosphoenolpyruvate carboxykinase gene from Corynebacterium glutamicum and significance of the enzyme for growth and amino acid production.
Corynebacterium glutamicum possesses phosphoenolpyruvate (PEP) carboxykinase, oxaloacetate decarboxylase and malic enzyme, all three in principle being able to catalyze the first step in gluconeogenesis. To investigate the role of PEP carboxykinase for growth and amino acid production, the respective pck gene was isolated, characterized and used for construction and analysis of mutants and over...
متن کاملMetabolic engineering of Corynebacterium glutamicum aimed at alternative carbon sources and new products
Corynebacterium glutamicum is well known as the amino acid-producing workhorse of fermentation industry, being used for multi-million-ton scale production of glutamate and lysine for more than 60 years. However, it is only recently that extensive research has focused on engineering it beyond the scope of amino acids. Meanwhile, a variety of corynebacterial strains allows access to alternative c...
متن کاملRapid Multi-Locus Sequence Typing Using Microfluidic Biochips
BACKGROUND Multiple locus sequence typing (MLST) has become a central genotyping strategy for analysis of bacterial populations. The scheme involves de novo sequencing of 6-8 housekeeping loci to assign unique sequence types. In this work we adapted MLST to a rapid microfluidics platform in order to enhance speed and reduce laboratory labor time. METHODOLOGY/PRINCIPAL FINDINGS Using two integ...
متن کاملفیلوژنی سویههای واکسن مایکوپلاسما آگالاکتیه موجود در ایران با استفاده از روش (Multi Locus Sequence typing (MLST
مایکوپلاسما آگالاکتیه یکی از عوامل اصلی ایجاد آگالاکسی در نشخوارکنندگان کوچک میباشد. ایران یکی از کانونهای اصلی اپیدمیهای سالانه این بیماری در جهان شناخته میشود. واکسن کشته آگالاکسی با استفاده از سه سویه بومی شیراز، طالقان و لرستان در موسسه رازی تولید میشود. به منظور شناسایی ویژگیهای ژنتیکی این سویهها سیستم تایپینگMulti Locus Sequence typing (MLST)i با تمرکز بر روی 5 ژن dnaA ،gltX ،gyrB ...
متن کاملMulti-virulence-locus sequence typing of Listeria monocytogenes.
A multi-virulence-locus sequence typing (MVLST) scheme was developed for subtyping Listeria monocytogenes, and the results obtained using this scheme were compared to those of pulsed-field gel electrophoresis (PFGE) and the published results of other typing methods, including ribotyping (RT) and multilocus sequence typing (MLST). A set of 28 strains (eight different serotypes and three known ge...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
دوره شماره
صفحات -
تاریخ انتشار 2015